5CZX Immune System date Aug 01, 2015
title Crystal Structure Of Notch3 Nrr In Complex With 20358 Fab
authors T.Hu, C.Fryer, R.Chopra, K.Clark
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 3
Chain: A, B
Fragment: Negative Regulatory Region (Unp Residues 1378-164
Synonym: Notch 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek

Molecule: 20358 Fab Heavy Chain
Chain: C, H
Synonym: Igg20358 Heavy Chain, Nvp-Lmw985 Heavy Chain

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 20358 Fab Light Chain
Chain: D, L
Synonym: Igg20358 Light Chain, Nvp-Lmw985 Light Chain

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
88.340 123.860 150.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, CL, EDO, NAG enzyme
A, B

Primary referenceCharacterization of activating mutations of NOTCH3 in T-cell acute lymphoblastic leukemia and anti-leukemic activity of NOTCH3 inhibitory antibodies., Bernasconi-Elias P, Hu T, Jenkins D, Firestone B, Gans S, Kurth E, Capodieci P, Deplazes-Lauber J, Petropoulos K, Thiel P, Ponsel D, Hee Choi S, LeMotte P, London A, Goetcshkes M, Nolin E, Jones MD, Slocum K, Kluk MJ, Weinstock DM, Christodoulou A, Weinberg O, Jaehrling J, Ettenberg SA, Buckler A, Blacklow SC, Aster JC, Fryer CJ, Oncogene. 2016 May 9. doi: 10.1038/onc.2016.133. PMID:27157619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (5czx.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (5czx.pdb2.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 5CZX
  • CSU: Contacts of Structural Units for 5CZX
  • Structure Factors (2378 Kb)
  • Retrieve 5CZX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CZX from S2C, [Save to disk]
  • Re-refined 5czx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CZX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CZX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5czx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5czx_H] [5czx_L] [5czx_A] [5czx_C] [5czx] [5czx_B] [5czx_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CZX: [IG_like] [IGv] [NL] [NOD] [NODP ] by SMART
  • Other resources with information on 5CZX
  • Community annotation for 5CZX at PDBWiki (http://pdbwiki.org)

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