5D1X date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene SAUSA300
Primary referenceGermline-encoded neutralization of a Staphylococcus aureus virulence factor by the human antibody repertoire., Yeung YA, Foletti D, Deng X, Abdiche Y, Strop P, Glanville J, Pitts S, Lindquist K, Sundar PD, Sirota M, Hasa-Moreno A, Pham A, Melton Witt J, Ni I, Pons J, Shelton D, Rajpal A, Chaparro-Riggers J, Nat Commun. 2016 Nov 18;7:13376. doi: 10.1038/ncomms13376. PMID:27857134
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (5d1x.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 5D1X
  • Structure Factors (428 Kb)
  • Retrieve 5D1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D1X from S2C, [Save to disk]
  • Re-refined 5d1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d1x] [5d1x_A] [5d1x_B] [5d1x_C] [5d1x_D] [5d1x_E]
  • SWISS-PROT database:
  • Domains found in 5D1X: [IG_like] [IGv] [NEAT ] by SMART

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