5D4K date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FUC, NAG, SO4 enzyme
Primary referenceThe structure and dynamics of secretory component and its interactions with polymeric immunoglobulins., Stadtmueller BM, Huey-Tubman KE, Lopez CJ, Yang Z, Hubbell WL, Bjorkman PJ, Elife. 2016 Mar 4;5. pii: e10640. doi: 10.7554/eLife.10640. PMID:26943617
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (5d4k.pdb1.gz) 165 Kb
  • Biological Unit Coordinates (5d4k.pdb2.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 5D4K
  • CSU: Contacts of Structural Units for 5D4K
  • Structure Factors (434 Kb)
  • Retrieve 5D4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D4K from S2C, [Save to disk]
  • Re-refined 5d4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d4k] [5d4k_A] [5d4k_B]
  • SWISS-PROT database:
  • Domain found in 5D4K: [IG ] by SMART

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