5D5U Transcription Dna date Aug 11, 2015
title Crystal Structure Of Human Hsf1 With Hse Dna
authors T.Neudegger, J.Verghese, M.Hayer-Hartl, F.U.Hartl, A.Bracher
compound source
Molecule: Heat Shock Element Dna
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Heat Shock Factor Protein 1
Chain: B
Fragment: Unp Residues 13-120
Synonym: Hsf 1,Heat Shock Transcription Factor 1,Hstf 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsf1, Hstf1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Htb
symmetry Space Group: P 2 21 21
R_factor 0.223 R_Free 0.267
length a length b length c angle alpha angle beta angle gamma
37.436 39.820 94.384 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.91 Å

Primary referenceStructure of human heat-shock transcription factor 1 in complex with DNA., Neudegger T, Verghese J, Hayer-Hartl M, Hartl FU, Bracher A, Nat Struct Mol Biol. 2016 Jan 4. doi: 10.1038/nsmb.3149. PMID:26727489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5u.pdb1.gz) 89 Kb
  • CSU: Contacts of Structural Units for 5D5U
  • Structure Factors (60 Kb)
  • Retrieve 5D5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5U from S2C, [Save to disk]
  • Re-refined 5d5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5D5U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5d5u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5u] [5d5u_B] [5d5u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5D5U: [HSF ] by SMART
  • Other resources with information on 5D5U
  • Community annotation for 5D5U at PDBWiki (http://pdbwiki.org)

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