5D5V Transcription Dna date Aug 11, 2015
title Crystal Structure Of Human Hsf1 With Satellite III Repeat Dn
authors T.Neudegger, J.Verghese, M.Hayer-Hartl, F.U.Hartl, A.Bracher
compound source
Molecule: Heat Shock Factor Protein 1
Chain: B, D
Fragment: Dna Binding Domain, Unp Residues 1-120
Synonym: Hsf 1,Heat Shock Transcription Factor 1,Hstf 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsf1, Hstf1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Htb

Molecule: Dna
Chain: A
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.234
length a length b length c angle alpha angle beta angle gamma
104.813 112.678 39.865 90.00 92.56 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand MG enzyme
D, B

Primary referenceStructure of human heat-shock transcription factor 1 in complex with DNA., Neudegger T, Verghese J, Hayer-Hartl M, Hartl FU, Bracher A, Nat Struct Mol Biol. 2016 Jan 4. doi: 10.1038/nsmb.3149. PMID:26727489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5v.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 5D5V
  • CSU: Contacts of Structural Units for 5D5V
  • Structure Factors (278 Kb)
  • Retrieve 5D5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5V from S2C, [Save to disk]
  • Re-refined 5d5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5D5V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5d5v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5v_B] [5d5v_C] [5d5v_A] [5d5v_D] [5d5v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5D5V: [HSF ] by SMART
  • Other resources with information on 5D5V
  • Community annotation for 5D5V at PDBWiki (http://pdbwiki.org)

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