5D7G	Apoptosis	date	Aug 13, 2015
title	Structure Of Human Atg5 E122d-Atg16l1 Complex At 3.0 Angstro
authors	Y.Qiu, B.A.Schulman
compound		source
Molecule: Autophagy Protein 5 Chain: A, C, E, G Synonym: Apg5-Like,Apoptosis-Specific Protein Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Atg5, Apg5l, Asp Expression_system: Baculovirus Expression Vector Pfastbac1- Expression_system_taxid: 274590 Expression_system_cell_line: Hi5 Expression_system_vector_type: Baculovirus
Molecule: Autophagy-Related Protein 16-1 Chain: B, D, F, H Fragment: Unp Residues 1-69 Synonym: Apg16-Like 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Atg16l1, Apg16l, Unq9393pro34307 Expression_system: Baculovirus Expression Vector Pfastbac1- Expression_system_taxid: 274590 Expression_system_cell_line: Hi5 Expression_system_vector_type: Baculovirus
symmetry	Space Group: C 1 2 1	R_factor 0.198 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 217.114 84.478 151.849 90.00 133.81 90.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Mutation in reduces autophagy and leads to ataxia with developmental delay., Kim M, Sandford E, Gatica D, Qiu Y, Liu X, Zheng Y, Schulman BA, Xu J, Semple I, Ro SH, Kim B, Mavioglu RN, Tolun A, Jipa A, Takats S, Karpati M, Li JZ, Yapici Z, Juhasz G, Lee JH, Klionsky DJ, Burmeister M, Elife. 2016 Jan 26;5. pii: e12245. doi: 10.7554/eLife.12245. PMID:26812546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk] Biological Unit Coordinates (5d7g.pdb1.gz) 96 Kb Biological Unit Coordinates (5d7g.pdb2.gz) 95 Kb CSU: Contacts of Structural Units for 5D7G Structure Factors (709 Kb) Retrieve 5D7G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D7G from S2C, [Save to disk] Re-refined 5d7g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D7G in 3D

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Visual 3D analysis of 5D7G

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d7g_B] [5d7g_E] [5d7g_C] [5d7g_A] [5d7g_G] [5d7g_H] [5d7g] [5d7g_D] [5d7g_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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