5DAG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Primary referenceThe PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79., Chen S, Yang Z, Wilkinson AW, Deshpande AJ, Sidoli S, Krajewski K, Strahl BD, Garcia BA, Armstrong SA, Patel DJ, Gozani O, Mol Cell. 2015 Oct 15;60(2):319-27. doi: 10.1016/j.molcel.2015.08.019. Epub 2015 , Oct 1. PMID:26439302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (5dag.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 5DAG
  • CSU: Contacts of Structural Units for 5DAG
  • Structure Factors (486 Kb)
  • Retrieve 5DAG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DAG from S2C, [Save to disk]
  • Re-refined 5dag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DAG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dag] [5dag_A]
  • SWISS-PROT database:
  • Domain found in 5DAG: [PHD ] by SMART

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