5DJ4 Signaling Protein date Sep 01, 2015
title Leucine-Bound Sestrin2 From Homo Sapiens
authors R.A.Saxton, K.E.Knockenhauer, T.U.Schwartz
compound source
Molecule: Sestrin-2
Chain: A, B, C, D, E
Synonym: Hi95
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sesn2, Sest2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_variant: Lobstr
symmetry Space Group: I 2 3
R_factor 0.196 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
293.029 293.029 293.029 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand LEU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B
  • mitochondrial DNA metabolic ...

  • Primary referenceStructural basis for leucine sensing by the Sestrin2-mTORC1 pathway., Saxton RA, Knockenhauer KE, Wolfson RL, Chantranupong L, Pacold ME, Wang T, Schwartz TU, Sabatini DM, Science. 2015 Nov 19. pii: aad2087. PMID:26586190
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (614 Kb) [Save to disk]
  • Biological Unit Coordinates (5dj4.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (5dj4.pdb2.gz) 126 Kb
  • Biological Unit Coordinates (5dj4.pdb3.gz) 128 Kb
  • Biological Unit Coordinates (5dj4.pdb4.gz) 113 Kb
  • Biological Unit Coordinates (5dj4.pdb5.gz) 128 Kb
  • Biological Unit Coordinates (5dj4.pdb6.gz) 372 Kb
  • Biological Unit Coordinates (5dj4.pdb7.gz) 369 Kb
  • Biological Unit Coordinates (5dj4.pdb8.gz) 359 Kb
  • LPC: Ligand-Protein Contacts for 5DJ4
  • CSU: Contacts of Structural Units for 5DJ4
  • Structure Factors (806 Kb)
  • Retrieve 5DJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DJ4 from S2C, [Save to disk]
  • Re-refined 5dj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DJ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dj4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dj4_E] [5dj4] [5dj4_C] [5dj4_D] [5dj4_A] [5dj4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DJ4
  • Community annotation for 5DJ4 at PDBWiki (http://pdbwiki.org)

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