5DX0 Transferase date Sep 23, 2015
title Crystal Structure Of Carm1, Sinefungin, And H3 Peptide (R17)
authors P.A.Boriack-Sjodin
compound source
Molecule: Histone-Arginine Methyltransferase Carm1
Chain: A, B, C, D
Fragment: Catalytic Domain (Unp Residues 134-479)
Synonym: Coactivator-Associated Arginine Methyltransferase Arginine N-Methyltransferase 4;
Ec: 2.1.1.-,2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Carm1, Prmt4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac

Molecule: H3 Peptide
Chain: F, G, H, I
Fragment: Unp Residues 14-31
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.211 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.722 98.847 208.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand ACE, GOL, SFG, SO4 enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


H, F, I, G


Primary referenceStructural Insights into Ternary Complex Formation of Human CARM1 with Various Substrates., Boriack-Sjodin PA, Jin L, Jacques SL, Drew A, Sneeringer C, Scott MP, Moyer MP, Ribich S, Moradei O, Copeland RA, ACS Chem Biol. 2015 Nov 23. PMID:26551522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (5dx0.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (5dx0.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 5DX0
  • CSU: Contacts of Structural Units for 5DX0
  • Structure Factors (1752 Kb)
  • Retrieve 5DX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DX0 from S2C, [Save to disk]
  • Re-refined 5dx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DX0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5dx0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dx0_B] [5dx0_D] [5dx0_C] [5dx0_I] [5dx0] [5dx0_F] [5dx0_G] [5dx0_A] [5dx0_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DX0
  • Community annotation for 5DX0 at PDBWiki (http://pdbwiki.org)

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