5E0U Dna Binding Protein date Sep 29, 2015
title Human Pcna Variant (S228i) Complexed With P21 At 1.9 Angstro
authors C.M.Duffy, B.J.Hilbert, B.A.Kelch
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, B, C
Synonym: Pcna,Cyclin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Blr(De3)
Expression_system_plasmid: Pet3c

Molecule: Cyclin-Dependent Kinase Inhibitor 1
Chain: D, E, F
Synonym: Cdk-Interacting Protein 1,Melanoma Differentiation Associated Protein 6,Mda-6,P21;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 3
R_factor 0.162 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.295 143.295 41.402 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.93 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceA Disease-Causing Variant in PCNA Disrupts a Promiscuous Protein Binding Site., Duffy CM, Hilbert BJ, Kelch BA, J Mol Biol. 2016 Mar 27;428(6):1023-40. doi: 10.1016/j.jmb.2015.11.029. Epub 2015, Dec 11. PMID:26688547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (5e0u.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5e0u.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (5e0u.pdb3.gz) 49 Kb
  • CSU: Contacts of Structural Units for 5E0U
  • Structure Factors (693 Kb)
  • Retrieve 5E0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E0U from S2C, [Save to disk]
  • Re-refined 5e0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5E0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5E0U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5e0u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e0u_C] [5e0u_E] [5e0u_A] [5e0u_F] [5e0u_B] [5e0u] [5e0u_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5E0U
  • Community annotation for 5E0U at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science