5E8D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, GOL enzyme
Primary referenceEpiregulin Recognition Mechanisms by Anti-Epiregulin Antibody 9E5: Structural, Functional and Molecular Dynamics Simulation Analyses., Kado Y, Mizohata E, Nagatoishi S, Iijima M, Shinoda K, Miyafusa T, Nakayama T, Yoshizumi T, Sugiyama A, Kawamura T, Lee YH, Matsumura H, Doi H, Fujitani H, Kodama T, Shibasaki Y, Tsumoto K, Inoue T, J Biol Chem. 2015 Dec 1. pii: jbc.M115.656009. PMID:26627827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (5e8d.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 5E8D
  • CSU: Contacts of Structural Units for 5E8D
  • Structure Factors (382 Kb)
  • Retrieve 5E8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5E8D from S2C, [Save to disk]
  • Re-refined 5e8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5E8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5e8d] [5e8d_A] [5e8d_H] [5e8d_L]
  • SWISS-PROT database:
  • Domains found in 5E8D: [EGF] [IG_like] [IGv ] by SMART

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