5EA0 Immune System date Oct 15, 2015
title Structure Of The Antibody 7968 With Human Complement Factor Peptide
authors R.T.Bushey, M.A.Moody, N.I.Nicely, S.M.Alam, B.F.Haynes, M.T.Wink E.B.Gottlin, M.J.Campa, H.X.Liao, E.F.Patz Jr.
compound source
Molecule: Heavy Chain Of Antibody 7968 Fab Fragment
Chain: H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293

Molecule: Light Chain Of Antibody 7968 Fab Fragment
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293

Molecule: Complement Factor H-Related Protein 2
Chain: P
Fragment: Unp Residues 150-162
Synonym: Fhr-2,Ddesk59,H Factor-Like 3,H Factor-Like Protei
Engineered: Yes
Other_details: The Peptide Was N-Terminally Acetylated And Terminally Amidated.

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.280 65.547 71.267 90.00 106.37 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand NH2 enzyme
Primary referenceA Therapeutic Antibody for Cancer, Derived from Single Human B Cells., Bushey RT, Moody MA, Nicely NL, Haynes BF, Alam SM, Keir ST, Bentley RC, Roy Choudhury K, Gottlin EB, Campa MJ, Liao HX, Patz EF Jr, Cell Rep. 2016 May 17;15(7):1505-13. doi: 10.1016/j.celrep.2016.04.038. Epub 2016, May 5. PMID:27160908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (5ea0.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 5EA0
  • CSU: Contacts of Structural Units for 5EA0
  • Structure Factors (535 Kb)
  • Retrieve 5EA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EA0 from S2C, [Save to disk]
  • Re-refined 5ea0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EA0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ea0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ea0_P] [5ea0_L] [5ea0] [5ea0_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5EA0: [IG_like] [IGv ] by SMART
  • Other resources with information on 5EA0
  • Community annotation for 5EA0 at PDBWiki (http://pdbwiki.org)

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