5EAY Dna Binding Protein date Oct 17, 2015
title Crystal Structure Of A Dna2 Peptide In Complex With Rpa 70n
authors C.Zhou, S.Pourmal, N.P.Pavletich
compound source
Molecule: Replication Protein A 70 Kda Dna-Binding Subunit
Chain: A, B, C, D
Fragment: Unp Residues 3-120
Synonym: Rp-A P70,Replication Factor A Protein 1,Rf-A Prote Single-Stranded Dna-Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rpa1, Repa1, Rpa70
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Replication Atp-Dependent Helicasenuclease D
Chain: E, F, G, H
Fragment: Unp Residues 1-17
Synonym: Hdna2,Dna Replication Atp-Dependent Helicase-Like
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.267
length a length b length c angle alpha angle beta angle gamma
134.303 50.882 76.528 90.00 103.94 90.00
method X-Ray Diffractionresolution 1.55 Å
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5eay.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 5EAY
  • Structure Factors (863 Kb)
  • Retrieve 5EAY in mmCIF format [Save to disk]
  • Re-refined 5eay structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EAY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5eay from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eay_G] [5eay_A] [5eay_E] [5eay_F] [5eay_D] [5eay] [5eay_B] [5eay_H] [5eay_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EAY
  • Community annotation for 5EAY at PDBWiki (http://pdbwiki.org)

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