5EH1 Cytokine date Oct 27, 2015
title Crystal Structure Of The Extracellular Part Of Receptor 2 Of Interferon Gamma
authors P.Kolenko, P.Mikulecky, J.Zahradnik, J.Dohnalek, T.Koval, J.Cerny I.Necasova, B.Schneider
compound source
Molecule: Interferon Gamma Receptor 2
Chain: A
Synonym: Ifn-Gamma-R2,Interferon Gamma Receptor Accessory F Af-1,Interferon Gamma Transducer 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifngr2, Ifngt1
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider 2 Cells
Expression_system_plasmid: Pmt-Bip-V5-His_a
symmetry Space Group: P 61 2 2
R_factor 0.190 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.102 58.102 377.266 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CYS, GOL, NAG enzyme
Primary referenceCrystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity., Mikulecky P, Zahradnik J, Kolenko P, Cerny J, Charnavets T, Kolarova L, Necasova I, Pham PN, Schneider B, Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1017-25. doi:, 10.1107/S2059798316012237. Epub 2016 Aug 18. PMID:27599734
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5eh1.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5EH1
  • CSU: Contacts of Structural Units for 5EH1
  • Structure Factors (2287 Kb)
  • Retrieve 5EH1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EH1 from S2C, [Save to disk]
  • Re-refined 5eh1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EH1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EH1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w5eh1, region H:23-231 [Jmol] [rasmolscript] [script source]
  • Fold representative 5eh1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eh1_A] [5eh1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EH1: [FN3 ] by SMART
  • Other resources with information on 5EH1
  • Community annotation for 5EH1 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science