5EIG Lyase date Oct 29, 2015
title Engineered Human Cystathionine Gamma Lyase (E59t, E339v) To Cysteine
authors W.Yan, J.Zhang
compound source
Molecule: Cystathionine Gamma-Lyase
Chain: A, C, D, E, F, G
Synonym: Cysteine-Protein Sulfhydrase,Gamma-Cystathionase
Ec: 4.4.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cth
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cystathionine Gamma-Lyase
Chain: B, H
Synonym: Cysteine-Protein Sulfhydrase,Gamma-Cystathionase
Ec: 4.4.1.1
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cth
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.191 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.377 163.455 181.625 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 5OW, CYS, LLP, SO4 enzyme Lyase E.C.4.4.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (506 Kb) [Save to disk]
  • Biological Unit Coordinates (5eig.pdb1.gz) 251 Kb
  • Biological Unit Coordinates (5eig.pdb2.gz) 253 Kb
  • LPC: Ligand-Protein Contacts for 5EIG
  • CSU: Contacts of Structural Units for 5EIG
  • Structure Factors (2687 Kb)
  • Retrieve 5EIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EIG from S2C, [Save to disk]
  • Re-refined 5eig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EIG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5eig from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eig_E] [5eig_F] [5eig_H] [5eig_A] [5eig_G] [5eig_B] [5eig] [5eig_C] [5eig_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EIG
  • Community annotation for 5EIG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science