5EZD Hydrolase date Nov 26, 2015
title Crystal Structure Of A Hepatocyte Growth Factor Activator In (Hai-1) Fragment Covering The Pkd-Like 'Internal' Domain An Domain 1
authors Z.Hong, P.A.Andreasen, J.P.Morth, J.K.Jensen
compound source
Molecule: Kunitz-Type Protease Inhibitor 1
Chain: A, B
Fragment: Unp Residues 168-303
Synonym: Hepatocyte Growth Factor Activator Inhibitor Type
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spint1, Hai1, Unq223pro256
Expression_system: Komagataella Pastoris Cbs 7435
Expression_system_taxid: 981350
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.650 75.140 75.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of a Two-Domain Fragment of Hepatocyte Growth Factor Activator Inhibitor-1: Functional Interactions between the Kunitz-Type Inhibitor Domain-1 and the Neighboring Polycystic Kidney Disease-like Domain., Hong Z, De Meulemeester L, Jacobi A, Pedersen JS, Morth JP, Andreasen PA, Jensen JK, J Biol Chem. 2016 May 6. pii: jbc.M115.707240. PMID:27189939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5ezd.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (5ezd.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5EZD
  • CSU: Contacts of Structural Units for 5EZD
  • Structure Factors (1335 Kb)
  • Retrieve 5EZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EZD from S2C, [Save to disk]
  • Re-refined 5ezd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ezd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ezd_B] [5ezd_A] [5ezd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5EZD: [KU ] by SMART
  • Other resources with information on 5EZD
  • Community annotation for 5EZD at PDBWiki (http://pdbwiki.org)

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