5FZT Structural Protein date Mar 15, 2016
title The Crystal Structure Of R7r8 In Complex With A Dlc1 Fragment.
authors T.Zacharchenko, X.Qian, B.T.Goult, D.Jethwa, T.Almeida, C.Ballest D.R.Critchley, D.R.Lowy, I.L.Barsukov
compound source
Molecule: Talin-1
Chain: A
Fragment: R7r8, Unp Residues 1359-1659
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Rho Gtpase-Activating Protein 7
Chain: B
Fragment: Tbs, Unp Residues 467-489
Synonym: Deleted In Liver Cancer 1 Protein, Dlc-1, Hp Prote Rho-Type Gtpase-Activating Protein 7, Start Domain-Contain Protein 12, Stard12, Star-Related Lipid Transfer Protein 1

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.1766 R_Free 0.2306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.260 73.260 111.820 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand MLI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLD Motif Recognition by Talin: Structure of the Talin-DLC1 Complex., Zacharchenko T, Qian X, Goult BT, Jethwa D, Almeida TB, Ballestrem C, Critchley DR, Lowy DR, Barsukov IL, Structure. 2016 May 31. pii: S0969-2126(16)30077-6. doi:, 10.1016/j.str.2016.04.016. PMID:27265849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (5fzt.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 5FZT
  • CSU: Contacts of Structural Units for 5FZT
  • Structure Factors (224 Kb)
  • Retrieve 5FZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FZT from S2C, [Save to disk]
  • Re-refined 5fzt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FZT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fzt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fzt] [5fzt_B] [5fzt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FZT
  • Community annotation for 5FZT at PDBWiki (http://pdbwiki.org)

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