5G05 Cell Cycle date Mar 16, 2016
title Cryo-Em Structure Of Combined Apo Phosphorylated Apc
authors S.Zhang, L.Chang, C.Alfieri, Z.Zhang, J.Yang, S.Maslen, M.Skehel, D
compound source
Molecule: Anaphase-Promoting Complex Subunit 1
Chain: A
Synonym: Apc1, Cyclosome Subunit 1, Mitotic Checkpoint Regu Testis-Specific Gene 24 Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc1, Tsg24
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 11
Chain: B
Synonym: Apc11, Cyclosome Subunit 11, Hepatocellular Carcin Associated Ring Finger Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc11, Hspc214
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Cell Division Cycle Protein 23 Homolog
Chain: C, P
Synonym: Anaphase-Promoting Complex Subunit 8, Apc8, Cyclos Subunit 8;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc23, Anapc8
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 15
Chain: D
Synonym: Apc15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc15, C11orf51, Hspc020
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 16
Chain: E
Synonym: Apc16, Cyclosome Subunit 16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc16, C10orf104
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Cell Division Cycle Protein 27 Homolog
Chain: F, H
Synonym: Anaphase-Promoting Complex Subunit 3, Apc3, Cdc27 Cdc27hs, H-Nuc;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc27, Anapc3, D0s1430e, D17s978e
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit Cdc26
Chain: G, W
Synonym: Anaphase-Promoting Complex Subunit 12, Apc12, Cell Cycle Protein 26 Homolog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc26, Anapc12, C9orf17
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 4
Chain: I
Synonym: Apc4, Cyclosome Subunit 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc4, Apc4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Cell Division Cycle Protein 16 Homolog
Chain: J, K
Synonym: Anaphase-Promoting Complex Subunit 6, Apc6, Cdc16 Cdc16hs, Cyclosome Subunit 6;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc16, Anapc6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 10
Chain: L
Synonym: Apc10, Cyclosome Subunit 10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc10, Apc10
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 13
Chain: M
Synonym: Apc13, Cyclosome Subunit 13
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Anapc13
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 2
Chain: N
Synonym: Apc2, Cyclosome Subunit 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc2, Apc2, Kiaa1406
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 5
Chain: O
Synonym: Apc5, Cyclosome Subunit 5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc5, Apc5
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Unidentified Peptide
Chain: T
Engineered: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 7
Chain: X, Y
Synonym: Apc7, Cyclosome Subunit 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc7, Apc7
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C, P


D


E


F, H


I


K, J


L


M


N


O


W, G


Y, X


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1314 Kb) [Save to disk]
  • Biological Unit Coordinates (5g05.pdb1.gz) 1292 Kb
  • LPC: Ligand-Protein Contacts for 5G05
  • CSU: Contacts of Structural Units for 5G05
  • Retrieve 5G05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G05 from S2C, [Save to disk]
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    • Visual 3D analysis of 5G05
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g05_G] [5g05_O] [5g05_L] [5g05_N] [5g05_P] [5g05_X] [5g05_D] [5g05_K] [5g05_W] [5g05_F] [5g05_A] [5g05_J] [5g05_Y] [5g05] [5g05_C] [5g05_H] [5g05_E] [5g05_T] [5g05_M] [5g05_B] [5g05_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5G05: [APC10] [APC2] [CULLIN] [RING] [TPR ] by SMART
    • Other resources with information on 5G05
  • Community annotation for 5G05 at PDBWiki (http://pdbwiki.org)

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