OCA Atlas for 5GAN

5GAN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GTP

enzyme

Gene
Ontology

Chain	Function	Process	Component
2
3
4
5
6
7
8
A	metallopeptidase activity
B
C
D
F
G
H
J
K
b, k
d, n
e, p
g, r
j, m
l, h
q, f

Primary reference

Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 A resolution., Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K, Nature. 2016 Feb 18;530(7590):298-302. doi: 10.1038/nature16940. Epub 2016 Feb 1. PMID:26829225

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1480 Kb) [Save to disk]

Biological Unit Coordinates (5gan.pdb1.gz) 1462 Kb

LPC: Ligand-Protein Contacts for 5GAN

CSU: Contacts of Structural Units for 5GAN

Retrieve 5GAN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5GAN from S2C, [Save to disk]

View 5GAN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gan] [5gan_2] [5gan_3] [5gan_4] [5gan_5] [5gan_6] [5gan_7] [5gan_8] [5gan_A] [5gan_B] [5gan_C] [5gan_D] [5gan_E] [5gan_F] [5gan_G] [5gan_H] [5gan_J] [5gan_K] [5gan_U] [5gan_V] [5gan_W] [5gan_b] [5gan_d] [5gan_e] [5gan_f] [5gan_g] [5gan_h] [5gan_j] [5gan_k] [5gan_l] [5gan_m] [5gan_n] [5gan_p] [5gan_q] [5gan_r] [5gan_x]

SWISS-PROT database:

Domains found in 5GAN: [AAA] [DEXDc] [DIM1] [EFG_C] [EFG_IV] [HAT] [HELICc] [JAB_MPN] [NOSIC] [SFM] [Sec63] [Sm] [TPR] [WD40 ] by SMART

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