5GDS		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	AIB, ALC, CHG, DGL, NAG, NAL	enzyme
related structures	by homologous chain: 1AIX, 1C4V, 1D3P
Gene Ontology	Chain Function Process Component H L
Primary reference	Hirunorms are true hirudin mimetics. The crystal structure of human alpha-thrombin-hirunorm V complex., De Simone G, Lombardi A, Galdiero S, Nastri F, Della Morte R, Staiano N, Pedone C, Bolognesi M, Pavone V, Protein Sci 1998 Feb;7(2):243-53. PMID:9521099

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (5gds.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 5GDS CSU: Contacts of Structural Units for 5GDS Likely Quarternary Molecular Structure file(s) for 5GDS Structure Factors (156 Kb) Retrieve 5GDS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GDS from S2C, [Save to disk] Re-refined 5gds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GDS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gds] [5gds_H] [5gds_I] [5gds_L] SWISS-PROT database: [P00734] Domain found in 5GDS: [Tryp_SPc ] by SMART

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