5H10 Signaling Protein Inhibitor date Oct 07, 2016
title Traf1-Tank Complex
authors C.M.Kim, H.H.Park
compound source
Molecule: Tnf Receptor-Associated Factor 1
Chain: A, B, C
Synonym: Epstein-Barr Virus-Induced Protein 6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Traf1, Ebi6
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
Expression_system_vector_type: Plasmid

Molecule: Traf Family Member-Associated Nf-Kappab Activator
Chain: D, E, F
Synonym: Tank Peptide
Engineered: Yes

Synthetic: Yes
Organism_scientific: Peptide Display Vector Fth1
Organism_taxid: 160651
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.210 79.034 113.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.21 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5h10.pdb1.gz) 98 Kb
  • CSU: Contacts of Structural Units for 5H10
  • Structure Factors (238 Kb)
  • Retrieve 5H10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H10 from S2C, [Save to disk]
  • View 5H10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5h10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h10_B] [5h10_C] [5h10_E] [5h10_A] [5h10_D] [5h10_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H10
  • Community annotation for 5H10 at PDBWiki (http://pdbwiki.org)

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