5H64 Transferase date Nov 10, 2016
title Cryo-Em Structure Of Mtorc1
authors H.Yang, J.Wang, M.Liu, X.Chen, M.Huang, D.Tan, M.Dong, C.C.L.Wong, J Y.Xu, H.Wang
compound source
Molecule: Serinethreonine-Protein Kinase Mtor
Chain: A, a
Synonym: Fk506-Binding Protein 12-Rapamycin Complex-Associa Protein 1,Fkbp12-Rapamycin Complex-Associated Protein,Mamma Target Of Rapamycin,Mtor,Mechanistic Target Of Rapamycin,Ra And Fkbp12 Target 1,Rapamycin Target Protein 1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtor, Frap, Frap1, Frap2, Raft1, Rapt1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f

Molecule: Regulatory-Associated Protein Of Mtor
Chain: B, b
Synonym: Raptor,P150 Target Of Rapamycin (Tor)-Scaffold Pro
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rptor, Kiaa1303, Raptor
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f

Molecule: Target Of Rapamycin Complex Subunit Lst8
Chain: C, c
Synonym: Torc Subunit Lst8,G Protein Beta Subunit-Like,Prot Gbetal,Mammalian Lethal With Sec13 Protein 8,Mlst8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mlst8, Gbl, Lst8
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, a


b, B
  • protein serine/threonine kin...
  • protein kinase activator act...


  • c, C
  • protein serine/threonine kin...


  • Primary reference4.4 A Resolution Cryo-EM structure of human mTOR Complex 1., Yang H, Wang J, Liu M, Chen X, Huang M, Tan D, Dong MQ, Wong CC, Wang J, Xu Y, Wang HW, Protein Cell. 2016 Dec;7(12):878-887. doi: 10.1007/s13238-016-0346-6. Epub 2016, Dec 1. PMID:27909983
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (889 Kb) [Save to disk]
  • Biological Unit Coordinates (5h64.pdb1.gz) 862 Kb
  • CSU: Contacts of Structural Units for 5H64
  • Retrieve 5H64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H64 from S2C, [Save to disk]
  • View 5H64 in 3D
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  • Visual 3D analysis of 5H64
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5h64 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h64_c] [5h64] [5h64_b] [5h64_C] [5h64_B] [5h64_A] [5h64_a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H64
  • Community annotation for 5H64 at PDBWiki (http://pdbwiki.org)

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