5HVQ Ligase date Jan 28, 2016
title Alternative Model Of The Mage-G1 Nse-1 Complex
authors J.A.Newman, C.D.O.Cooper, A.K.Roos, H.Aitkenhead, U.C.T.Opperman H.J.Cho, R.Osman, O.Gileadi
compound source
Molecule: Melanoma-Associated Antigen G1
Chain: D
Synonym: Hepatocellular Carcinoma-Associated Protein 4,Mage Antigen,Necdin-Like Protein 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ndnl2, Hca4, Mageg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Non-Structural Maintenance Of Chromosomes Element Homolog;
Chain: C
Synonym: Non-Smc Element 1 Homolog
Ec: 6.3.2.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsmce1, Hspc333, Hspc337
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.237 R_Free 0.268
length a length b length c angle alpha angle beta angle gamma
83.257 154.327 53.726 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.92 Å
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA

Primary referenceStructures of Two Melanoma-Associated Antigens Suggest Allosteric Regulation of Effector Binding., Newman JA, Cooper CD, Roos AK, Aitkenhead H, Oppermann UC, Cho HJ, Osman R, Gileadi O, PLoS One. 2016 Feb 24;11(2):e0148762. doi: 10.1371/journal.pone.0148762., eCollection 2016. PMID:26910052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5hvq.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 5HVQ
  • CSU: Contacts of Structural Units for 5HVQ
  • Structure Factors (295 Kb)
  • Retrieve 5HVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HVQ from S2C, [Save to disk]
  • Re-refined 5hvq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HVQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hvq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hvq_C] [5hvq_D] [5hvq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HVQ: [MAGE ] by SMART
  • Other resources with information on 5HVQ
  • Community annotation for 5HVQ at PDBWiki (http://pdbwiki.org)

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