5HZV Signaling Protein date Feb 03, 2016
title Crystal Structure Of The Zona Pellucida Module Of Human Endo
authors M.Bokhove, T.Saito, L.Jovine
compound source
Molecule: Maltose-Binding Periplasmic Protein,Endoglin
Chain: A
Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein
Engineered: Yes
Mutation: Yes
Other_details: This Protein Is A Chimera. Residues 368-734 E. Coli Maltose Binding Protein (Mbp), Correspond To Residu Of Swiss-Prot Database Entry P0aex9 And Contain Mutations D K450a, E539a, N540a, A582h, K586h, K606a, A679v, I684v, E72 D730a And R734n (Corresponding To D108a, K109a, E198a, N199 K245h, K265a, A338v, I343v, E385a, E388a, D389a And R393n I Residues 738-981 Are From Human Endoglin Protein And Corres Residues 338-581 Of Swiss-Prot Database Entry P17813. Subtr From The Pdb Entry Residue Numbering Results In The Numberi According To Uniprot Entry P17813.
Organism_scientific: Escherichia Coli (Strain K12), Homo Sa
Organism_common: Human
Organism_taxid: 83333, 9606
Strain: K12
Cell: Endothelial
Gene: Male, B4034, Jw3994, Eng, End
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_atcc_number: Crl-3216
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 65
R_factor 0.232 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.160 125.160 88.540 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand GLC, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • Primary referenceStructural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1., Saito T, Bokhove M, Croci R, Zamora-Caballero S, Han L, Letarte M, de Sanctis D, Jovine L, Cell Rep. 2017 May 30;19(9):1917-1928. doi: 10.1016/j.celrep.2017.05.011. PMID:28564608
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (5hzv.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 5HZV
  • CSU: Contacts of Structural Units for 5HZV
  • Structure Factors (185 Kb)
  • Retrieve 5HZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HZV from S2C, [Save to disk]
  • Re-refined 5hzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hzv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hzv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HZV
  • Community annotation for 5HZV at PDBWiki (http://pdbwiki.org)

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