5HZV	Signaling Protein	date	Feb 03, 2016
title	Crystal Structure Of The Zona Pellucida Module Of Human Endo
authors	M.Bokhove, T.Saito, L.Jovine
compound		source
Molecule: Maltose-Binding Periplasmic Protein,Endoglin Chain: A Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein Engineered: Yes Mutation: Yes Other_details: This Protein Is A Chimera. Residues 368-734 E. Coli Maltose Binding Protein (Mbp), Correspond To Residu Of Swiss-Prot Database Entry P0aex9 And Contain Mutations D K450a, E539a, N540a, A582h, K586h, K606a, A679v, I684v, E72 D730a And R734n (Corresponding To D108a, K109a, E198a, N199 K245h, K265a, A338v, I343v, E385a, E388a, D389a And R393n I Residues 738-981 Are From Human Endoglin Protein And Corres Residues 338-581 Of Swiss-Prot Database Entry P17813. Subtr From The Pdb Entry Residue Numbering Results In The Numberi According To Uniprot Entry P17813.		Organism_scientific: Escherichia Coli (Strain K12), Homo Sa Organism_common: Human Organism_taxid: 83333, 9606 Strain: K12 Cell: Endothelial Gene: Male, B4034, Jw3994, Eng, End Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-3216 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phlsec
symmetry	Space Group: P 65	R_factor 0.232 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.160 125.160 88.540 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	GLC, GOL	enzyme
Gene Ontology	Chain Function Process Component A carbohydrate transmembrane t...
Primary reference	Structural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1., Saito T, Bokhove M, Croci R, Zamora-Caballero S, Han L, Letarte M, de Sanctis D, Jovine L, Cell Rep. 2017 May 30;19(9):1917-1928. doi: 10.1016/j.celrep.2017.05.011. PMID:28564608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk] Biological Unit Coordinates (5hzv.pdb1.gz) 193 Kb LPC: Ligand-Protein Contacts for 5HZV CSU: Contacts of Structural Units for 5HZV Structure Factors (185 Kb) Retrieve 5HZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HZV from S2C, [Save to disk] Re-refined 5hzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HZV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hzv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5HZV

Community annotation for 5HZV at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---