5I04 Signaling Protein date Feb 03, 2016
title Crystal Structure Of The Orphan Region Of Human Endoglincd1
authors T.Saito, M.Bokhove, D.De Sanctis, L.Jovine
compound source
Molecule: Maltose-Binding Periplasmic Protein,Endoglin
Chain: A
Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein
Engineered: Yes
Mutation: Yes
Other_details: This Protein Is A Chimera. Residues 56-422 A Coli Maltose Binding Protein (Mbp), Correspond To Residues Swiss-Prot Database Entry P0aex9 And Contain Mutations I57t K138a, E227a, N228a, A270h, K274h, K294a, A367v, I372v, E41 D418a And R422n (Corresponding To I28t, D108a, K109a, E198a A241h, K245h, K265a, A338v, I343v, E385a, E388a, D389a And P0aex9). Residues 426-737 Are From Human Endoglin Protein A Correspond To Residues 26-337 Of Swiss-Prot Database Entry Subtracting 400 From The Pdb Entry Residue Numbering Result Numbering According To Uniprot Entry P17813.
Organism_scientific: Escherichia Coli K-12, Homo Sapiens
Organism_common: Human
Organism_taxid: 83333, 9606
Cell: Endothelial
Gene: Male, B4034, Jw3994, Eng, End
Expression_system: Homo Sapiens
Expression_system_common: Human, Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
Expression_system_atcc_number: Crl-3022
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 65
R_factor 0.220 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.150 114.150 120.620 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.42 Å
ligand GLC, NAG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • Primary referenceStructural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1., Saito T, Bokhove M, Croci R, Zamora-Caballero S, Han L, Letarte M, de Sanctis D, Jovine L, Cell Rep. 2017 May 30;19(9):1917-1928. doi: 10.1016/j.celrep.2017.05.011. PMID:28564608
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (5i04.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 5I04
  • CSU: Contacts of Structural Units for 5I04
  • Structure Factors (447 Kb)
  • Retrieve 5I04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I04 from S2C, [Save to disk]
  • Re-refined 5i04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I04
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i04 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i04_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I04
  • Community annotation for 5I04 at PDBWiki (http://pdbwiki.org)

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