5I0I Motor Protein date Feb 04, 2016
title Crystal Structure Of Myosin X Motor Domain With 2iq Motifs I Powerstroke State
authors T.Isabet, H.L.Sweeney, A.Houdusse
compound source
Molecule: Unconventional Myosin-X
Chain: A, B
Synonym: Unconventional Myosin-10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myo10, Kiaa0799
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Calmodulin
Chain: C
Synonym: Cam
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Calmodulin
Chain: E
Synonym: Cam
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Calmodulin
Chain: G
Synonym: Cam
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Calmodulin
Chain: I
Synonym: Cam
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3, Cal Cam3, Camc, Camiii;
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.950 173.410 178.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand ADP, MG, MPO, SO4, VO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, E


I, G


Primary referenceThe myosin X motor is optimized for movement on actin bundles., Ropars V, Yang Z, Isabet T, Blanc F, Zhou K, Lin T, Liu X, Hissier P, Samazan F, Amigues B, Yang ED, Park H, Pylypenko O, Cecchini M, Sindelar CV, Sweeney HL, Houdusse A, Nat Commun. 2016 Sep 1;7:12456. doi: 10.1038/ncomms12456. PMID:27580874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (667 Kb) [Save to disk]
  • Biological Unit Coordinates (5i0i.pdb1.gz) 330 Kb
  • Biological Unit Coordinates (5i0i.pdb2.gz) 334 Kb
  • LPC: Ligand-Protein Contacts for 5I0I
  • CSU: Contacts of Structural Units for 5I0I
  • Structure Factors (529 Kb)
  • Retrieve 5I0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I0I from S2C, [Save to disk]
  • Re-refined 5i0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I0I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i0i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i0i_G] [5i0i_C] [5i0i] [5i0i_I] [5i0i_A] [5i0i_E] [5i0i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5I0I: [EFh] [IQ] [MYSc ] by SMART
  • Other resources with information on 5I0I
  • Community annotation for 5I0I at PDBWiki (http://pdbwiki.org)

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