5I2K Transport Protein date Feb 09, 2016
title Structure Of The Human Glun1glun2a Lbd In Complex With 7-{[ Fluorophenyl)Amino]Methyl}-N,2-Dimethyl-5-Oxo-5h-[1,3]Thiaz A]Pyrimidine-3-Carboxamide (Compound 19)
authors H.J.A.Wallweber, P.J.Lupardus
compound source
Molecule: Glutamate Receptor Ionotropic, Nmda 2a
Chain: A
Fragment: Unp Residues 401-539, Gt Linker, Unp Residues 661
Synonym: Glun2a, Glutamate [Nmda] Receptor Subunit Epsilon- Methyl D-Aspartate Receptor Subtype 2a, Hnr2a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin2a, Nmdar2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutamate Receptor Ionotropic, Nmda 1
Chain: B
Fragment: Unp Residues 415-565, Gt Linker, Unp Residues 684
Synonym: Glun1, Glutamate [Nmda] Receptor Subunit Zeta-1,N- Aspartate Receptor Subunit Nr1, Nmd-R1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grin1, Nmdar1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.655 89.329 119.447 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.86 Å
ligand 67H, GLU, GLY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5i2k.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 5I2K
  • CSU: Contacts of Structural Units for 5I2K
  • Structure Factors (297 Kb)
  • Retrieve 5I2K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I2K from S2C, [Save to disk]
  • Re-refined 5i2k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I2K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I2K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i2k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i2k] [5i2k_A] [5i2k_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5I2K: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 5I2K
  • Community annotation for 5I2K at PDBWiki (http://pdbwiki.org)

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