5IWM Isomerase date Mar 22, 2016
title 2.5a Structure Of Gsk945237 With S.Aureus Dna Gyrase And Dna
authors B.D.Bax, T.J.Miles
compound source
Molecule: Dna Gyrase Subunit B,Dna Gyrase Subunit B
Chain: B, D
Fragment: Unp Residues 409-543, 580-644,Unp Residues 409-54 644;
Ec: 5.99.1.3,5.99.1.3
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 158879
Strain: N315
Gene: Gyrb, Sa0005
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Gyrase Subunit A
Chain: A, C
Ec: 5.99.1.3
Engineered: Yes

Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Gyra, Sa0006
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Apgpcpcpgptpapgpgptptpcpapcpcpgpcpapcp
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Tpgptpgpcpgpgptpgpapapcpcptpapcpgpgpcp
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 61
R_factor 0.180 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.785 93.785 413.350 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand 6EJ, GOL, MN enzyme Isomerase E.C.5.99.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (5iwm.pdb1.gz) 253 Kb
  • LPC: Ligand-Protein Contacts for 5IWM
  • CSU: Contacts of Structural Units for 5IWM
  • Structure Factors (573 Kb)
  • Retrieve 5IWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IWM from S2C, [Save to disk]
  • Re-refined 5iwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IWM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5iwm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iwm_E] [5iwm_B] [5iwm_F] [5iwm_A] [5iwm] [5iwm_D] [5iwm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IWM: [TOP2c] [TOP4c ] by SMART
  • Other resources with information on 5IWM
  • Community annotation for 5IWM at PDBWiki (http://pdbwiki.org)

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