5IXG Unknown Function date Mar 23, 2016
title Crystal Structure Of Burkholderia Cenocepacia Bcnb
authors S.A.Loutet, M.E.P.Murphy
compound source
Molecule: Ycei
Chain: B, C, A, D
Engineered: Yes
Organism_scientific: Burkholderia Cenocepacia Pc184
Organism_taxid: 350702
Gene: Bcpg_01022
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.160 R_Free 0.194
length a length b length c angle alpha angle beta angle gamma
51.160 101.170 63.490 90.00 97.20 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand OTP, PEG enzyme
Primary referenceAntibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance., El-Halfawy OM, Klett J, Ingram RJ, Loutet SA, Murphy ME, Martin-Santamaria S, Valvano MA, MBio. 2017 Mar 14;8(2). pii: e00225-17. doi: 10.1128/mBio.00225-17. PMID:28292982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (5ixg.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (5ixg.pdb2.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 5IXG
  • CSU: Contacts of Structural Units for 5IXG
  • Structure Factors (2212 Kb)
  • Retrieve 5IXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IXG from S2C, [Save to disk]
  • Re-refined 5ixg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IXG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ixg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ixg_A] [5ixg_C] [5ixg_D] [5ixg] [5ixg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IXG
  • Community annotation for 5IXG at PDBWiki (http://pdbwiki.org)

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