5IXI Cytokine date Mar 23, 2016
title Structure Of Human Jak1 Fermsh2 In Complex With Ifnlr1il10
authors R.Ferrao, H.J.A.Wallweber, P.J.Lupardus
compound source
Molecule: Tyrosine-Protein Kinase Jak1
Chain: A
Fragment: Unp Residues 35-559
Synonym: Janus Kinase 1,Jak-1
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jak1, Jak1a, Jak1b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Chimera Protein Of Interferon Lambda Receptor 1 A Interleukin-10 Receptor Subunit Alpha;
Chain: B
Fragment: Unp Residues 250-259,Unp Residues 263-303
Synonym: Ifn-Lambda-R1,Cytokine Receptor Class-II Member 12 Receptor Family 2 Member 12,Crf2-12,Interleukin-28 Receptor Alpha,Il-28ra,Likely Interleukin Or Cytokine Receptor 2,Lic 10ra,Cdw210a,Interleukin-10 Receptor Subunit 1,Il-10r1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnlr1, Il28ra, Licr2, Il10ra, Il10r
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.213 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.170 110.420 94.870 90.00 98.11 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand
enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structural Basis for Class II Cytokine Receptor Recognition by JAK1., Ferrao R, Wallweber HJ, Ho H, Tam C, Franke Y, Quinn J, Lupardus PJ, Structure. 2016 Apr 27. pii: S0969-2126(16)30034-X. doi:, 10.1016/j.str.2016.03.023. PMID:27133025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5ixi.pdb1.gz) 161 Kb
  • CSU: Contacts of Structural Units for 5IXI
  • Structure Factors (242 Kb)
  • Retrieve 5IXI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IXI from S2C, [Save to disk]
  • Re-refined 5ixi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IXI in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IXI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ixi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ixi_A] [5ixi_B] [5ixi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IXI: [B41] [SH2 ] by SMART
  • Other resources with information on 5IXI
  • Community annotation for 5IXI at PDBWiki (http://pdbwiki.org)

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