5J89 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 6GX, EDO enzyme
Primary referenceStructural basis for small molecule targeting of the programmed death ligand 1 (PD-L1)., Zak KM, Grudnik P, Guzik K, Zieba BJ, Musielak B, Domling A, Dubin G, Holak TA, Oncotarget. 2016 Apr 13. doi: 10.18632/oncotarget.8730. PMID:27083005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (5j89.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (5j89.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 5J89
  • CSU: Contacts of Structural Units for 5J89
  • Structure Factors (2005 Kb)
  • Retrieve 5J89 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J89 from S2C, [Save to disk]
  • Re-refined 5j89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5J89 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j89] [5j89_A] [5j89_B] [5j89_C] [5j89_D]
  • SWISS-PROT database:
  • Domains found in 5J89: [IG] [IG_like ] by SMART

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