5JCY Motor Protein date Apr 15, 2016
title Spir2-Gtbm Bound To Myova-Gtd
authors O.Pylypenko, G.Malherbes, T.Welz, E.Kerkhoff, A.Houdusse
compound source
Molecule: Unconventional Myosin-Va
Chain: A
Synonym: Dilute Myosin Heavy Chain,Non-Muscle,Myosin Heavy Myosin-12,Myoxin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myo5a, Myh12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Protein Spire Homolog 2
Chain: B
Synonym: Spir-2
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.151 R_Free 0.191
length a length b length c angle alpha angle beta angle gamma
99.610 41.220 108.220 90.00 115.89 90.00
method X-Ray Diffractionresolution 1.80 Å
Primary referenceCoordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes., Pylypenko O, Welz T, Tittel J, Kollmar M, Chardon F, Malherbe G, Weiss S, Michel CI, Samol-Wolf A, Grasskamp AT, Hume A, Goud B, Baron B, England P, Titus MA, Schwille P, Weidemann T, Houdusse A, Kerkhoff E, Elife. 2016 Sep 13;5. pii: e17523. doi: 10.7554/eLife.17523. PMID:27623148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5jcy.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 5JCY
  • Structure Factors (358 Kb)
  • Retrieve 5JCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JCY from S2C, [Save to disk]
  • Re-refined 5jcy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JCY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jcy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jcy_B] [5jcy_A] [5jcy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JCY: [DIL ] by SMART
  • Other resources with information on 5JCY
  • Community annotation for 5JCY at PDBWiki (http://pdbwiki.org)

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