5JKD	Cell Adhesion	date	Apr 26, 2016
title	Crystal Structure Of Human Izumo1-Juno Complex (Crystal Form
authors	U.Ohto, H.Ishida, T.Shimizu
compound		source
Molecule: Izumo Sperm-Egg Fusion Protein 1 Chain: A Fragment: Unp Residues 22-255 Synonym: Oocyte Bindingfusion Factor,Obf,Sperm-Specific Pr Izumo; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Izumo1 Expression_system: Drosophila Expression_system_taxid: 7215
Molecule: Sperm-Egg Fusion Protein Juno Chain: B Fragment: Unp Residues 20-228 Synonym: Folate Receptor 4,Folate Receptor Delta,Fr-Delta,I Receptor Protein Juno; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Izumo1r, Folr4, Juno Expression_system: Drosophila Expression_system_taxid: 7215
symmetry	Space Group: C 1 2 1	R_factor 0.220 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 145.604 65.377 77.199 90.00 104.24 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CL, NAG	enzyme
Gene Ontology	Chain Function Process Component A B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (5jkd.pdb1.gz) 147 Kb LPC: Ligand-Protein Contacts for 5JKD CSU: Contacts of Structural Units for 5JKD Structure Factors (334 Kb) Retrieve 5JKD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JKD from S2C, [Save to disk] Re-refined 5jkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JKD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JKD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jkd_B] [5jkd] [5jkd_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5JKD: [IG ] by SMART

Other resources with information on 5JKD

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