5JNO Cell Cycle date Apr 30, 2016
title Crystal Structure Of The Bd1-Ntpr Complex From Bend3 And Pic
authors G.Pitchai, P.Mesa, I.D.Hickson, G.Montoya
compound source
Molecule: Ben Domain-Containing Protein 3
Chain: A
Fragment: Unp Residues 236-347
Synonym: Bend3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bend3, Kiaa1553
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Dna Excision Repair Protein Ercc-6-Like
Chain: B
Fragment: Unp Residues 10-66
Synonym: Atp-Dependent Helicase Ercc6-Like,Plk1-Interacting Checkpoint Helicase,Tumor Antigen Bj-Hcc-15;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ercc6l, Pich
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 61 2 2
R_factor 0.222 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.280 47.280 431.579 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5jno.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5JNO
  • CSU: Contacts of Structural Units for 5JNO
  • Structure Factors (339 Kb)
  • Retrieve 5JNO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JNO from S2C, [Save to disk]
  • View 5JNO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JNO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jno from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jno_B] [5jno_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JNO
  • Community annotation for 5JNO at PDBWiki (http://pdbwiki.org)

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