5JVT	Transcription Dna	date	May 11, 2016
title	Crystal Structure Of The Dna Binding Domain Of Transcription Fli1 In Complex With An 11-Mer Dna Gaccggaagtg
authors	C.Hou, O.V.Tsodikov
compound		source
Molecule: Friend Leukemia Integration 1 Transcription Facto Chain: A, D, G Synonym: Proto-Oncogene Fli-1,Transcription Factor Ergb Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fli1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Ril
Molecule: Dna (5'-D(Gpapcpcpgpgpapapgptpg)-3') Chain: B, E, H Engineered: Yes		Synthetic: Yes Organism_scientific: Endothia Gyrosa Organism_taxid: 40263
Molecule: Dna (5'-D(Cpapcptptpcpcpgpgptpc)-3') Chain: C, F, I Engineered: Yes		Synthetic: Yes Organism_scientific: Endothia Gyrosa Organism_taxid: 40263
symmetry	Space Group: P 61 2 2	R_factor 0.194 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 191.845 191.845 87.556 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	GOL, PO4	enzyme
Gene Ontology	Chain Function Process Component A, D, G
Primary reference	Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1., Hou C, Weidenbach S, Cano KE, Wang Z, Mitra P, Ivanov DN, Rohr J, Tsodikov OV, Nucleic Acids Res. 2016 Sep 1. pii: gkw761. PMID:27587584

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk] Biological Unit Coordinates (5jvt.pdb1.gz) 53 Kb Biological Unit Coordinates (5jvt.pdb2.gz) 52 Kb Biological Unit Coordinates (5jvt.pdb3.gz) 53 Kb LPC: Ligand-Protein Contacts for 5JVT CSU: Contacts of Structural Units for 5JVT Structure Factors (295 Kb) Retrieve 5JVT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JVT from S2C, [Save to disk] Re-refined 5jvt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JVT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JVT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jvt] [5jvt_D] [5jvt_H] [5jvt_G] [5jvt_I] [5jvt_C] [5jvt_B] [5jvt_E] [5jvt_F] [5jvt_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5JVT: [ETS ] by SMART

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