5K3V date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B, D


Primary referenceStructural definition of the lysine swing in Arabidopsis thaliana PDX1: Intermediate channeling facilitating vitamin B6 biosynthesis., Robinson GC, Kaufmann M, Roux C, Fitzpatrick TB, Proc Natl Acad Sci U S A. 2016 Sep 19. pii: 201608125. PMID:27647886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (5k3v.pdb1.gz) 526 Kb
  • Biological Unit Coordinates (5k3v.pdb2.gz) 526 Kb
  • LPC: Ligand-Protein Contacts for 5K3V
  • CSU: Contacts of Structural Units for 5K3V
  • Structure Factors (15486 Kb)
  • Retrieve 5K3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K3V from S2C, [Save to disk]
  • Re-refined 5k3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5K3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k3v] [5k3v_A] [5k3v_B] [5k3v_C] [5k3v_D]
  • SWISS-PROT database:

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