5K9S Transport Protein date Jun 01, 2016
title Importin-Alpha In Complex With Hnf1-Beta Peptide
authors M.M.Wiedmann, S.Aibara, D.R.Spring, M.Stewart, J.Brenton
compound source
Molecule: Importin Subunit Alpha-1
Chain: A
Synonym: Importin Alpha P1,Karyopherin Subunit Alpha-2,Pend Targeting Complex 58 Kda Subunit,Ptac58,Rag Cohort Protein Alpha;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kpna2, Rch1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Hnf1 Beta A Splice Variant 2
Chain: B, C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hnf1b
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: C 2 2 21
R_factor 0.185 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
81.380 111.394 129.358 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (5k9s.pdb1.gz) 216 Kb
  • CSU: Contacts of Structural Units for 5K9S
  • Structure Factors (477 Kb)
  • Retrieve 5K9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K9S from S2C, [Save to disk]
  • Re-refined 5k9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5K9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5K9S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5k9s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k9s] [5k9s_C] [5k9s_B] [5k9s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5K9S: [ARM ] by SMART
  • Other resources with information on 5K9S
  • Community annotation for 5K9S at PDBWiki (http://pdbwiki.org)

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