5KDH date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 6RX, EDO, SO4 enzyme
Primary referenceBET Bromodomain Inhibitors with One-Step Synthesis Discovered from Virtual Screen., Ayoub AM, Hawk LML, Herzig RJ, Jiang J, Wisniewski AJ, Gee CT, Zhao P, Zhu JY, Berndt N, Offei-Addo NK, Scott TG, Qi J, Bradner JE, Ward TR, Schonbrunn E, Georg GI, Pomerantz WCK, J Med Chem. 2017 Jun 22;60(12):4805-4817. doi: 10.1021/acs.jmedchem.6b01336. Epub, 2017 Jun 7. PMID:28535045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5kdh.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 5KDH
  • CSU: Contacts of Structural Units for 5KDH
  • Structure Factors (180 Kb)
  • Retrieve 5KDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KDH from S2C, [Save to disk]
  • Re-refined 5kdh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kdh_A]
  • SWISS-PROT database:

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