5KTE Transport Protein Immune System date Jul 11, 2016
title Crystal Structure Of Deinococcus Radiodurans Mnth, An Nramp- Transition Metal Transporter
authors L.B.Bane, R.Gaudet, W.A.Weihofen, A.Singharoy
compound source
Molecule: Divalent Metal Cation Transporter Mnth
Chain: A
Fragment: Unp Residues 26-436
Engineered: Yes
Mutation: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 243230
Strain: Atcc 13939 Dsm 20539 Jcm 16871 Lmg 4051 Nbr Ncimb 9279 R1 Vkm B-1422;
Gene: Mnth, Dr_1709
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21

Molecule: Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma Cell Line

Molecule: Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma Cell Line
symmetry Space Group: I 2 2 2
R_factor 0.268 R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.131 132.077 220.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.94 Å
ligand OS enzyme
Gene DR
Gene
Ontology
ChainFunctionProcessComponent
A
  • manganese ion transmembrane ...
  • cadmium ion transmembrane tr...
  • symporter activity


  • Primary referenceCrystal Structure and Conformational Change Mechanism of a Bacterial Nramp-Family Divalent Metal Transporter., Bozzi AT, Bane LB, Weihofen WA, Singharoy A, Guillen ER, Ploegh HL, Schulten K, Gaudet R, Structure. 2016 Dec 6;24(12):2102-2114. doi: 10.1016/j.str.2016.09.017. Epub 2016, Nov 10. PMID:27839948
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (5kte.pdb1.gz) 244 Kb
  • LPC: Ligand-Protein Contacts for 5KTE
  • CSU: Contacts of Structural Units for 5KTE
  • Structure Factors (223 Kb)
  • Retrieve 5KTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KTE from S2C, [Save to disk]
  • Re-refined 5kte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KTE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5kte from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kte_L] [5kte] [5kte_H] [5kte_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5KTE: [IG_like] [IGv ] by SMART
  • Other resources with information on 5KTE
  • Community annotation for 5KTE at PDBWiki (http://pdbwiki.org)

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