5L23 Protein Binding date Jul 30, 2016
title Crystal Structure Of The Complex Between The N-Terminal Sh3 Crkii And A Proline-Rich Ligand
authors V.S.Bhatt, I.Krieger, J.Sacchettini, J.H.Cho
compound source
Molecule: Adapter Molecule Crk
Chain: A
Fragment: Unp Residues 134-191
Synonym: Proto-Oncogene C-Crk,P38
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Crk, Crko
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C3g Derived Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.600 41.340 56.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand ACE, NH2, PEG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (5l23.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 5L23
  • CSU: Contacts of Structural Units for 5L23
  • Structure Factors (449 Kb)
  • Retrieve 5L23 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L23 from S2C, [Save to disk]
  • Re-refined 5l23 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L23 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L23
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l23 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l23_A] [5l23_B] [5l23]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L23: [SH3 ] by SMART
  • Other resources with information on 5L23
  • Community annotation for 5L23 at PDBWiki (http://pdbwiki.org)

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