5L4K Structural Protein date May 25, 2016
title The Human 26s Proteasome Lid
authors A.Schweitzer, A.Aufderheide, T.Rudack, F.Beck
compound source
Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 4
Chain: W
Synonym: 26s Proteasome Regulatory Subunit Rpn10,26s Protea Regulatory Subunit S5a,Antisecretory Factor 1,Asf,Multiubiq Chain-Binding Protein;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 14
Chain: V
Synonym: 26s Proteasome Regulatory Subunit Rpn11,26s Protea Associated Pad1 Homolog 1;
Ec: 3.4.19.-

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 8
Chain: T
Synonym: 26s Proteasome Regulatory Subunit Rpn12,26s Protea Regulatory Subunit S14,P31;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Complex Subunit Dss1
Chain: Y
Synonym: Deleted In Split Handsplit Foot Protein 1,Split H Deleted Protein 1,Split Handfoot Malformation Type 1 Prote

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 2
Chain: Z
Synonym: 26s Proteasome Regulatory Subunit Rpn1,26s Proteas Regulatory Subunit S2,26s Proteasome Subunit P97,Protein 55 Necrosis Factor Type 1 Receptor-Associated Protein 2;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 1
Chain: N
Synonym: 26s Proteasome Regulatory Subunit Rpn2,26s Proteas Regulatory Subunit S1,26s Proteasome Subunit P112;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 3
Chain: S
Synonym: 26s Proteasome Regulatory Subunit Rpn3,26s Proteas Regulatory Subunit S3,Proteasome Subunit P58;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 12
Chain: P
Synonym: 26s Proteasome Regulatory Subunit Rpn5,26s Proteas Regulatory Subunit P55;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 11
Chain: Q
Synonym: 26s Proteasome Regulatory Subunit Rpn6,26s Proteas Regulatory Subunit S9,26s Proteasome Regulatory Subunit P44

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 6
Chain: R
Synonym: 26s Proteasome Regulatory Subunit Rpn7,26s Proteas Regulatory Subunit S10,Breast Cancer-Associated Protein Sga Phosphonoformate Immuno-Associated Protein 4,Proteasome Reg Particle Subunit P44s10,P42a;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 7
Chain: U
Synonym: 26s Proteasome Regulatory Subunit Rpn8,26s Proteas Regulatory Subunit S12,Mov34 Protein Homolog,Proteasome Sub

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 13
Chain: O
Synonym: 26s Proteasome Regulatory Subunit Rpn9,26s Proteas Regulatory Subunit S11,26s Proteasome Regulatory Subunit P4

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
ligand
enzyme Hydrolase E.C.3.4.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
N
  • enzyme regulator activity


  • O


    P


    Q


    R
  • enzyme regulator activity


  • S
  • enzyme regulator activity


  • T


    U


    V
  • endopeptidase activator acti...


  • W


    Y


    Z
  • enzyme regulator activity


  • Primary referenceStructure of the human 26S proteasome at a resolution of 3.9 A., Schweitzer A, Aufderheide A, Rudack T, Beck F, Pfeifer G, Plitzko JM, Sakata E, Schulten K, Forster F, Baumeister W, Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7816-21. doi:, 10.1073/pnas.1608050113. Epub 2016 Jun 24. PMID:27342858
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1573 Kb) [Save to disk]
  • Biological Unit Coordinates (5l4k.pdb1.gz) 1564 Kb
  • CSU: Contacts of Structural Units for 5L4K
  • Retrieve 5L4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L4K from S2C, [Save to disk]
  • View 5L4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L4K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l4k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l4k_N] [5l4k_U] [5l4k] [5l4k_Z] [5l4k_P] [5l4k_R] [5l4k_Q] [5l4k_W] [5l4k_Y] [5l4k_T] [5l4k_S] [5l4k_O] [5l4k_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5L4K: [DSS1_SEM1] [JAB_MPN] [PAM] [PINT] [UIM] [VWA ] by SMART
  • Other resources with information on 5L4K
  • Community annotation for 5L4K at PDBWiki (http://pdbwiki.org)

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