5L6O Transferase date May 30, 2016
title Ephb3 Kinase Domain Covalently Bound To An Irreversible Inhi (Compound 3)
authors M.Schimpl, R.Overman, A.Kung, Y.C.Chen, F.Ni, J.Zhu, M.Turner, H.M C.Zhang
compound source
Molecule: Ephrin Type-B Receptor 3
Chain: A
Synonym: Eph-Like Tyrosine Kinase 2,Eph-Like Kinase 2,Embry Kinase 2,Hek2,Tyrosine-Protein Kinase Tyro6;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephb3, Etk2, Hek2, Tyro6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
46.817 57.214 113.184 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand 6P6, DIO enzyme Transferase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5l6o.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 5L6O
  • CSU: Contacts of Structural Units for 5L6O
  • Structure Factors (712 Kb)
  • Retrieve 5L6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L6O from S2C, [Save to disk]
  • Re-refined 5l6o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L6O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l6o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l6o_A] [5l6o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L6O: [TyrKc ] by SMART
  • Other resources with information on 5L6O
  • Community annotation for 5L6O at PDBWiki (http://pdbwiki.org)

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