5LBN Transferase date Jun 16, 2016
title High-Resolution Crystal Structure Of The Ubc Core Domain Of Ube2e1ubch6
authors M.Anandapadamanaban, M.Moche, M.Sunnerhagen
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 E1
Chain: A
Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme E Ubiquitin-Conjugating Enzyme E1,Ubch6,Ubiquitin Carrier Pro Ubiquitin-Protein Ligase E1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2e1, Ubch6
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Ros-2
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.183
length a length b length c angle alpha angle beta angle gamma
38.301 40.555 91.317 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand GOL enzyme Transferase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5lbn.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5LBN
  • CSU: Contacts of Structural Units for 5LBN
  • Structure Factors (171 Kb)
  • Retrieve 5LBN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LBN from S2C, [Save to disk]
  • View 5LBN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LBN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lbn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lbn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LBN
  • Community annotation for 5LBN at PDBWiki (http://pdbwiki.org)

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