5LPE Hydrolase date Aug 12, 2016
title Kallikrein-Related Peptidase 10 Complex With Zn2+
authors P.Goettig, M.Debela, V.Magdolen, W.Bode, H.Brandstetter
compound source
Molecule: Kallikrein-10
Chain: A, B
Fragment: Unp Residues 43-276
Synonym: Normal Epithelial Cell-Specific 1,Protease Serine-
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klk10, Nes1, Prssl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.278
length a length b length c angle alpha angle beta angle gamma
52.914 67.037 57.768 90.00 104.37 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand SO4, ZN enzyme Hydrolase E.C.3.4.21 BRENDA
A, B

Primary referenceStructural basis for the Zn 2+ inhibition of the zymogen-like kallikrein-related peptidase 10., Debela M, Magdolen V, Bode W, Brandstetter H, Goettig P, Biol Chem. 2016 Sep 9. pii:, /j/bchm.just-accepted/hsz-2016-0205/hsz-2016-0205.xml. doi:, 10.1515/hsz-2016-0205. PMID:27611765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5lpe.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (5lpe.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 5LPE
  • CSU: Contacts of Structural Units for 5LPE
  • Structure Factors (248 Kb)
  • Retrieve 5LPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LPE from S2C, [Save to disk]
  • Re-refined 5lpe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LPE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lpe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lpe] [5lpe_A] [5lpe_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LPE: [Tryp_SPc ] by SMART
  • Other resources with information on 5LPE
  • Community annotation for 5LPE at PDBWiki (http://pdbwiki.org)

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