5M6U Transferase date Oct 26, 2016
title Human Pi3kdelta In Complex With Lasw1579
authors V.Segarra, B.Hernandez, E.Lozoya, M.Blaesse, S.Hoeppner, A.Jestel
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Delta Isoform;
Chain: A
Fragment: N-Terminal Truncated
Synonym: Ptdins-3-Kinase Subunit Delta,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Delta,P110d
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cd
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Phosphatidylinositol 3-Kinase Regulatory Subunit
Chain: B
Fragment: Unp Residues 431-599
Synonym: Ptdins-3-Kinase Regulatory Subunit Alpha, Phosphatidylinositol 3-Kinase 85 Kda Regulatory Subunit Alp 3-Kinase Regulatory Subunit P85-Alpha;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3r1, Grb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.256 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.493 113.212 144.321 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand 7KA enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDiscovery of a Potent, Selective, and Orally Available PI3Kdelta Inhibitor for the Treatment of Inflammatory Diseases., Erra M, Taltavull J, Greco A, Bernal FJ, Caturla JF, Gracia J, Dominguez M, Sabate M, Paris S, Soria S, Hernandez B, Armengol C, Cabedo J, Bravo M, Calama E, Miralpeix M, Lehner MD, ACS Med Chem Lett. 2016 Nov 30;8(1):118-123. doi: 10.1021/acsmedchemlett.6b00438., eCollection 2017 Jan 12. PMID:28105286
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (5m6u.pdb1.gz) 333 Kb
  • LPC: Ligand-Protein Contacts for 5M6U
  • CSU: Contacts of Structural Units for 5M6U
  • Structure Factors (431 Kb)
  • Retrieve 5M6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M6U from S2C, [Save to disk]
  • Re-refined 5m6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M6U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5m6u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m6u] [5m6u_A] [5m6u_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M6U
  • Community annotation for 5M6U at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science