5MR7 Transcription date Dec 21, 2016
title Crystal Structure Of The Dbd Domain Of Human Grhl2
authors A.Schuetz, Q.Ming, Y.Roske, U.Heinemann
compound source
Molecule: Grainyhead-Like Protein 2 Homolog
Chain: A, B
Fragment: Unp Residues 217-492
Synonym: Brother Of Mammalian Grainyhead,Transcription Fact Like 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grhl2, Bom, Tfcp2l3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.193 48.274 101.304 90.00 102.92 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of gene regulation by the Grainyhead/CP2 transcription factor family., Ming Q, Roske Y, Schuetz A, Walentin K, Ibraimi I, Schmidt-Ott KM, Heinemann U, Nucleic Acids Res. 2018 Jan 4. pii: 4788346. doi: 10.1093/nar/gkx1299. PMID:29309642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5mr7.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (5mr7.pdb2.gz) 72 Kb
  • CSU: Contacts of Structural Units for 5MR7
  • Structure Factors (117 Kb)
  • Retrieve 5MR7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MR7 from S2C, [Save to disk]
  • View 5MR7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MR7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mr7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mr7_A] [5mr7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MR7
  • Community annotation for 5MR7 at PDBWiki (http://pdbwiki.org)

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