5MS3 Hydrolase date Dec 30, 2016
title Kallikrein-Related Peptidase 8 Calcium Complex
authors M.Debela, V.Magdolen, W.Skala, W.Bode, H.Brandstetter, P.Goettig
compound source
Molecule: Kallikrein-8
Chain: A
Synonym: Hk8,Neuropsin,Np,Ovasin,Serine Protease 19,Serine Tadg-14,Tumor-Associated Differentially Expressed Gene 14 P
Ec: 3.4.21.118
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klk8, Nrpn, Prss19, Tadg14, Unq283pro322
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.997 51.741 82.863 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA enzyme Hydrolase E.C.3.4.21.118 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5ms3.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5MS3
  • CSU: Contacts of Structural Units for 5MS3
  • Structure Factors (89 Kb)
  • Retrieve 5MS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MS3 from S2C, [Save to disk]
  • View 5MS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MS3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ms3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ms3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MS3
  • Community annotation for 5MS3 at PDBWiki (http://pdbwiki.org)

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