5MU8	Cytokine	date	Jan 12, 2017
title	Human Tnf-Alpha In Complex With Jnj525
authors	J.M.Blevitt, M.D.Hack, K.L.Herman, P.F.Jackson, P.J.Krawczuk, A.D A.X.Liu, T.Mirzadegan, M.I.Nelen, A.P.Patrick, S.Steinbacher, M. K.J.Lumb
compound		source
Molecule: Tumor Necrosis Factor Chain: A, B, C, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S W, X, Y, Z, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, T, U, V, W; Fragment: Unp Residues 77-233 Synonym: Cachectin,Tnf-Alpha,Tumor Necrosis Factor Ligand S Member 2,Tnf-A; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tnf, Tnfa, Tnfsf2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.211 R_Free 0.300
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.888 118.348 186.747 97.57 94.31 98.75
method	X-Ray Diffraction	resolution	3.00 Å
ligand	JNI	enzyme
Gene Ontology	Chain Function Process Component S, a, T, N, K, d, Y, j, Z, u, k, g, t, e, J, W, v, s, B, H, c, q, b, D, I, G, U, w, F, r, V, Q, h, M, C, L, f, i, A, n, O, X, P, m, l, p, R, o
Primary reference	Structural Basis of Small-Molecule Aggregate Induced Inhibition of a Protein-Protein Interaction., Blevitt JM, Hack MD, Herman KL, Jackson PF, Krawczuk PJ, Lebsack AD, Liu AX, Mirzadegan T, Nelen MI, Patrick AN, Steinbacher S, Milla ME, Lumb KJ, J Med Chem. 2017 Mar 16. PMID:28300404

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2442 Kb) [Save to disk] Biological Unit Coordinates (5mu8.pdb1.gz) 113 Kb Biological Unit Coordinates (5mu8.pdb2.gz) 117 Kb Biological Unit Coordinates (5mu8.pdb3.gz) 114 Kb Biological Unit Coordinates (5mu8.pdb4.gz) 115 Kb Biological Unit Coordinates (5mu8.pdb5.gz) 114 Kb Biological Unit Coordinates (5mu8.pdb6.gz) 115 Kb Biological Unit Coordinates (5mu8.pdb7.gz) 113 Kb Biological Unit Coordinates (5mu8.pdb8.gz) 117 Kb Biological Unit Coordinates (5mu8.pdb9.gz) 113 Kb LPC: Ligand-Protein Contacts for 5MU8 CSU: Contacts of Structural Units for 5MU8 Structure Factors (3852 Kb) Retrieve 5MU8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MU8 from S2C, [Save to disk] Re-refined 5mu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MU8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MU8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mu8_b] [5mu8_Z] [5mu8_D] [5mu8_r] [5mu8_X] [5mu8_S] [5mu8_w] [5mu8_T] [5mu8_F] [5mu8_I] [5mu8_U] [5mu8_N] [5mu8_Y] [5mu8_o] [5mu8_c] [5mu8_p] [5mu8_A] [5mu8_W] [5mu8_Q] [5mu8_d] [5mu8_l] [5mu8_s] [5mu8_G] [5mu8_q] [5mu8_e] [5mu8_B] [5mu8_i] [5mu8_H] [5mu8_h] [5mu8_t] [5mu8_a] [5mu8_V] [5mu8_L] [5mu8_J] [5mu8_C] [5mu8_K] [5mu8_P] [5mu8] [5mu8_k] [5mu8_M] [5mu8_n] [5mu8_u] [5mu8_m] [5mu8_f] [5mu8_R] [5mu8_O] [5mu8_g] [5mu8_v] [5mu8_j] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5MU8 at PDBWiki (http://pdbwiki.org)

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