5MU8 HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525 date
authors Blevitt, J.M., Hack, M.D., Herman, K.L., Jackson, P.F., Krawczuk, P.J., Lebsack, A.D., Liu, A.X., Mirzadegan, T., Nelen, M.I., Patrick, A.P., Steinbacher, S., Milla, M.E., Lumb, K.J.
compound source
symmetry
R_factor
R_Free 0.30000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand JNI enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, a, T, N, K, d, Y, j, Z, u, k, g, t, e, J, W, v, s, B, H, c, q, b, D, I, G, U, w, F, r, V, Q, h, M, C, L, f, i, A, n, O, X, P, m, l, p, R, o


Primary referenceStructural Basis of Small-Molecule Aggregate Induced Inhibition of a Protein-Protein Interaction., Blevitt JM, Hack MD, Herman KL, Jackson PF, Krawczuk PJ, Lebsack AD, Liu AX, Mirzadegan T, Nelen MI, Patrick AN, Steinbacher S, Milla ME, Lumb KJ, J Med Chem. 2017 Mar 16. PMID:28300404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2442 Kb) [Save to disk]
  • Biological Unit Coordinates (5mu8.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (5mu8.pdb2.gz) 117 Kb
  • Biological Unit Coordinates (5mu8.pdb3.gz) 114 Kb
  • Biological Unit Coordinates (5mu8.pdb4.gz) 115 Kb
  • Biological Unit Coordinates (5mu8.pdb5.gz) 114 Kb
  • Biological Unit Coordinates (5mu8.pdb6.gz) 115 Kb
  • Biological Unit Coordinates (5mu8.pdb7.gz) 113 Kb
  • Biological Unit Coordinates (5mu8.pdb8.gz) 117 Kb
  • Biological Unit Coordinates (5mu8.pdb9.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 5MU8
  • CSU: Contacts of Structural Units for 5MU8
  • Structure Factors (3852 Kb)
  • Retrieve 5MU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MU8 from S2C, [Save to disk]
  • Re-refined 5mu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MU8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mu8_b] [5mu8_Z] [5mu8_D] [5mu8_r] [5mu8_X] [5mu8_S] [5mu8_w] [5mu8_T] [5mu8_F] [5mu8_I] [5mu8_U] [5mu8_N] [5mu8_Y] [5mu8_o] [5mu8_c] [5mu8_p] [5mu8_A] [5mu8_W] [5mu8_Q] [5mu8_d] [5mu8_l] [5mu8_s] [5mu8_G] [5mu8_q] [5mu8_e] [5mu8_B] [5mu8_i] [5mu8_H] [5mu8_h] [5mu8_t] [5mu8_a] [5mu8_V] [5mu8_L] [5mu8_J] [5mu8_C] [5mu8_K] [5mu8_P] [5mu8] [5mu8_k] [5mu8_M] [5mu8_n] [5mu8_u] [5mu8_m] [5mu8_f] [5mu8_R] [5mu8_O] [5mu8_g] [5mu8_v] [5mu8_j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MU8
  • Community annotation for 5MU8 at PDBWiki (http://pdbwiki.org)

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