5MW7 Signaling Protein date Jan 18, 2017
title Human Jagged2 C2-Egf3
authors R.J.Suckling, P.A.Handford, S.M.Lea
compound source
Molecule: Protein Jagged-2
Chain: A
Synonym: Hj2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jag2
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell: Schneider 2
Expression_system_plasmid: Pexs2-2
symmetry Space Group: P 21 21 21
R_factor 0.255 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.814 77.205 96.357 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand FUC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional dissection of the interplay between lipid and Notch binding by human Notch ligands., Suckling RJ, Korona B, Whiteman P, Chillakuri C, Holt L, Handford PA, Lea SM, EMBO J. 2017 Aug 1;36(15):2204-2215. doi: 10.15252/embj.201796632. Epub 2017 Jun , 1. PMID:28572448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (5mw7.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5MW7
  • CSU: Contacts of Structural Units for 5MW7
  • Structure Factors (342 Kb)
  • Retrieve 5MW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MW7 from S2C, [Save to disk]
  • Re-refined 5mw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MW7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mw7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mw7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MW7
  • Community annotation for 5MW7 at PDBWiki (http://pdbwiki.org)

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