5MX0 Structural Protein date Jan 20, 2017
title Crystal Structure Of Human Fibromodulin
authors P.Paracuellos, E.Hohenester
compound source
Molecule: Fibromodulin
Chain: A, B
Synonym: Fm,Collagen-Binding 59 Kda Protein,Keratan Sulfate Proteoglycan Fibromodulin,Kspg Fibromodulin;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fmod, Fm, Slrr2e
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293 C18
Expression_system_atcc_number: Atcc-Crl-10852
Expression_system_plasmid: Pcep-Pu
symmetry Space Group: C 1 2 1
R_factor 0.179 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.110 98.930 111.340 90.00 107.39 90.00
method X-Ray Diffractionresolution 2.21 Å
ligand BMA, CL, FUC, NAG, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin., Paracuellos P, Kalamajski S, Bonna A, Bihan D, Farndale RW, Hohenester E, Matrix Biol. 2017 Feb 17. pii: S0945-053X(17)30015-X. doi:, 10.1016/j.matbio.2017.02.002. PMID:28215822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (5mx0.pdb1.gz) 168 Kb
  • Biological Unit Coordinates (5mx0.pdb2.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 5MX0
  • CSU: Contacts of Structural Units for 5MX0
  • Structure Factors (2388 Kb)
  • Retrieve 5MX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MX0 from S2C, [Save to disk]
  • Re-refined 5mx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MX0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mx0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mx0] [5mx0_A] [5mx0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MX0
  • Community annotation for 5MX0 at PDBWiki (http://pdbwiki.org)

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